IL_3T1Y_017
3D structure
- PDB id
- 3T1Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a human anti-codon stem loop (HASL) of transfer RNA Lysine 3 (TRNALYS3) bound to an mRNA with an AAG-codon in the A-site and paromomycin
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- GGAAGAAG*UGUAAAC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3T1Y_017 not in the Motif Atlas
- Homologous match to IL_4LFB_017
- Geometric discrepancy: 0.1126
- The information below is about IL_4LFB_017
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_62329.1
- Basepair signature
- cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW
- Number of instances in this motif group
- 2
Unit IDs
3T1Y|1|A|G|404
3T1Y|1|A|G|405
3T1Y|1|A|A|406
3T1Y|1|A|A|407
3T1Y|1|A|G|408
3T1Y|1|A|A|409
3T1Y|1|A|A|410
3T1Y|1|A|G|411
*
3T1Y|1|A|U|422
3T1Y|1|A|G|423
3T1Y|1|A|U|424
3T1Y|1|A|A|425
3T1Y|1|A|A|426
3T1Y|1|A|A|427
3T1Y|1|A|C|428
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain D
- 30S ribosomal protein S4
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