IL_3T1Y_060

3D structure

PDB id

3T1Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a human anti-codon stem loop (HASL) of transfer RNA Lysine 3 (TRNALYS3) bound to an mRNA with an AAG-codon in the A-site and paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CGAAG*CGAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3T1Y_060 not in the Motif Atlas

Homologous match to IL_4LFB_062

Geometric discrepancy: 0.0824

The information below is about IL_4LFB_062

Detailed Annotation

UAA/GAN variation

Broad Annotation

UAA/GAN variation

Motif group

IL_77691.7

Basepair signature

cWW-tSH-L-R-L-cWW

Number of instances in this motif group

7

Unit IDs

3T1Y|1|A|C|1413
3T1Y|1|A|G|1414
3T1Y|1|A|A|1415
3T1Y|1|A|A|1416
3T1Y|1|A|G|1417
*
3T1Y|1|A|C|1443
3T1Y|1|A|G|1444
3T1Y|1|A|A|1445
3T1Y|1|A|G|1446

Current chains

Chain A

16S rRNA

Nearby chains

Chain T

30S ribosomal protein S20