IL_3TD1_002

3D structure

PDB id

3TD1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial A1408G-mutant and the protozoa cytoplasmic ribosomal decoding site in complex with geneticin

Experimental method

X-RAY DIFFRACTION

Resolution

2.1 Å

Loop

Sequence

CGC*GAAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_50196.1

Basepair signature

cWW-R-cWW

Number of instances in this motif group

17

Unit IDs

3TD1|1|A|C|7
3TD1|1|A|G|8
3TD1|1|A|C|9
*
3TD1|1|B|G|39
3TD1|1|B|A|40
3TD1|1|B|A|41
3TD1|1|B|G|42

Current chains

Chain A

RNA (5'-R(*UP*UP*GP*CP*GP*UP*CP*GP*CP*GP*(5BU)P*CP*GP*AP*CP*GP*AP*AP*GP*UP*CP*GP*C)-3')

Chain B

RNA (5'-R(*UP*UP*GP*CP*GP*UP*CP*GP*CP*GP*(5BU)P*CP*GP*AP*CP*GP*AP*AP*GP*UP*CP*GP*C)-3')

Nearby chains