IL_3U56_001

3D structure

PDB id

3U56 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of mutant ribosomal protein T217V TthL1 in complex with 80nt 23S RNA from Thermus thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

2.1 Å

Loop

Sequence

AUG*CUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3U56_001 not in the Motif Atlas

Geometric match to IL_4PCJ_001

Geometric discrepancy: 0.1845

The information below is about IL_4PCJ_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_68118.5

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

34

Unit IDs

3U56|1|B|A|2108
3U56|1|B|U|2109
3U56|1|B|G|2110
*
3U56|1|B|C|2179
3U56|1|B|U|2180
3U56|1|B|U|2181

Current chains

Chain B

RNA (80-MER)

Nearby chains

Chain A

50S ribosomal protein L1