IL_3U5F_011

3D structure

PDB id

3U5F (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution. This entry contains ribosomal RNA and ions of the 40S subunit, ribosome B

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GUAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

3U5F|1|6|U|170

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_86694.2

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

5

Unit IDs

3U5F|1|6|G|143
3U5F|1|6|U|144
3U5F|1|6|A|145
3U5F|1|6|U|146
3U5F|1|6|A|147
3U5F|1|6|A|148
3U5F|1|6|C|149
*
3U5F|1|6|G|165
3U5F|1|6|C|166
3U5F|1|6|U|167
3U5F|1|6|A|168
3U5F|1|6|A|169
3U5F|1|6|U|170
3U5F|1|6|A|171
3U5F|1|6|C|172

Current chains

Chain 6

18S rRNA

Nearby chains