IL_3U5F_064

3D structure

PDB id

3U5F (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution. This entry contains ribosomal RNA and ions of the 40S subunit, ribosome B

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

AUAAGGAUUG*CUUGAUUU

Length

18 nucleotides

Bulged bases

3U5F|1|6|G|1228

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_87776.1

Basepair signature

cWW-L-R-R-L-L-tSH-tSS-cWW-cWW-cWW

Number of instances in this motif group

1

Unit IDs

3U5F|1|6|A|1224
3U5F|1|6|U|1225
3U5F|1|6|A|1226
3U5F|1|6|A|1227
3U5F|1|6|G|1228
3U5F|1|6|G|1229
3U5F|1|6|A|1230
3U5F|1|6|U|1231
3U5F|1|6|U|1232
3U5F|1|6|G|1233
*
3U5F|1|6|C|1252
3U5F|1|6|U|1253
3U5F|1|6|U|1254
3U5F|1|6|G|1255
3U5F|1|6|A|1256
3U5F|1|6|U|1257
3U5F|1|6|U|1258
3U5F|1|6|U|1259

Current chains

Chain 6

18S rRNA

Nearby chains