IL_3U5F_073

3D structure

PDB id

3U5F (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution. This entry contains ribosomal RNA and ions of the 40S subunit, ribosome B

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

AAUA*UUCU

Length

8 nucleotides

Bulged bases

3U5F|1|6|A|1346, 3U5F|1|6|U|1347

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_40041.1

Basepair signature

cWW-R-cWW

Number of instances in this motif group

2

Unit IDs

3U5F|1|6|A|1345
3U5F|1|6|A|1346
3U5F|1|6|U|1347
3U5F|1|6|A|1348
*
3U5F|1|6|U|1377
3U5F|1|6|U|1378
3U5F|1|6|C|1379
3U5F|1|6|U|1380

Current chains

Chain 6

18S rRNA

Nearby chains