IL_3U5F_077

3D structure

PDB id

3U5F (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution. This entry contains ribosomal RNA and ions of the 40S subunit, ribosome B

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GUCUAAC*GUAAUC

Length

13 nucleotides

Bulged bases

3U5F|1|6|A|1516

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_06692.1

Basepair signature

cWW-tSS-L-cSS-R-L-cWW

Number of instances in this motif group

2

Unit IDs

3U5F|1|6|G|1488
3U5F|1|6|U|1489
3U5F|1|6|C|1490
3U5F|1|6|U|1491
3U5F|1|6|A|1492
3U5F|1|6|A|1493
3U5F|1|6|C|1494
*
3U5F|1|6|G|1513
3U5F|1|6|U|1514
3U5F|1|6|A|1515
3U5F|1|6|A|1516
3U5F|1|6|U|1517
3U5F|1|6|C|1518

Current chains

Chain 6

18S rRNA

Nearby chains