IL_3UXR_046

3D structure

PDB id

3UXR (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of thermorubin in complex with the 70S ribosome from Thermus thermophilus. This file contains the 50S subunit of one 70S ribosome. The entire crystal structure contains two 70S ribosomes.

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

AUGAGUAA*UGAAAUU

Length

15 nucleotides

Bulged bases

None detected

QA status

QA data not found

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_85647.1

Basepair signature

15_cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

18

Unit IDs

3UXR|1|A|A|1262
3UXR|1|A|U|1263
3UXR|1|A|G|1264
3UXR|1|A|A|1265
3UXR|1|A|G|1266
3UXR|1|A|U|1267
3UXR|1|A|A|1268
3UXR|1|A|A|1269
*
3UXR|1|A|U|2011
3UXR|1|A|G|2012
3UXR|1|A|A|2013
3UXR|1|A|A|2014
3UXR|1|A|A|2015
3UXR|1|A|U|2016
3UXR|1|A|U|2017

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 5

50S ribosomal protein L32

Chain F

50S ribosomal protein L4

Chain W

50S ribosomal protein L22