IL_4A2X_001
3D structure
- PDB id
- 4A2X (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of duck RIG-I C-terminal domain (CTD) with 14-mer dSRNA
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 4 Å
Loop
- Sequence
- AGA*UCU
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Self-complementary: AGA,UCU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4A2X_001 not in the Motif Atlas
- Geometric match to IL_5TBW_110
- Geometric discrepancy: 0.1489
- The information below is about IL_5TBW_110
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_44258.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 301
Unit IDs
4A2X|1|L|A|4
4A2X|1|L|G|5
4A2X|1|L|A|6
*
4A2X|1|M|U|9
4A2X|1|M|C|10
4A2X|1|M|U|11
Current chains
- Chain L
- 5'-R(*GP*GP*GP*AP*GP*AP*AP*CP*AP*AP*CP*GP*CP*GP)-3'
- Chain M
- 5'-R(*CP*GP*CP*GP*UP*UP*GP*UP*UP*CP*UP*CP*CP*CP)-3'
Nearby chains
- Chain A
- RETINOIC ACID INDUCIBLE PROTEIN I
- Chain B
- RETINOIC ACID INDUCIBLE PROTEIN I
- Chain C
- RETINOIC ACID INDUCIBLE PROTEIN I
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