IL_4A3J_001
3D structure
- PDB id
- 4A3J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- RNA Polymerase II initial transcribing complex with a 2nt DNA-RNA hybrid and soaked with GMPCPP
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.7 Å
Loop
- Sequence
- GAAAG*CTTTC
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Self-complementary:
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4A3J|1|N|DG|3
4A3J|1|N|DA|4
4A3J|1|N|DA|5
4A3J|1|N|DA|6
4A3J|1|N|DG|7
*
4A3J|1|T|DC|10
4A3J|1|T|DT|11
4A3J|1|T|DT|12
4A3J|1|T|DT|13
4A3J|1|T|DC|14
Current chains
- Chain N
- 5'-D(*GP*TP*AP*GP*AP*AP*AP*GP*CP*TP*AP*GP*CP*TP)-3'
- Chain T
- 5'-D(*AP*GP*CP*TP*AP*GP*CP*TP*TP*TP*CP*BRUP*AP*CP*CP *TP*GP*AP*AP*CP*AP*AP*CP*TP*AP*AP*CP)-3'
Nearby chains
- Chain A
- DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1
- Chain B
- DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2
Coloring options: