IL_4AQY_046
3D structure
- PDB id
- 4AQY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of ribosome-apramycin complexes
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.5 Å
Loop
- Sequence
- CG*CUG
- Length
- 5 nucleotides
- Bulged bases
- 4AQY|1|A|U|1196
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4AQY_046 not in the Motif Atlas
- Homologous match to IL_5J7L_049
- Geometric discrepancy: 0.2541
- The information below is about IL_5J7L_049
- Detailed Annotation
- Single bulged A
- Broad Annotation
- No text annotation
- Motif group
- IL_31462.7
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 132
Unit IDs
4AQY|1|A|C|1060
4AQY|1|A|G|1061
*
4AQY|1|A|C|1195
4AQY|1|A|U|1196
4AQY|1|A|G|1197
Current chains
- Chain A
- 16S RIBOSOMAL RNA
Nearby chains
- Chain C
- 30S RIBOSOMAL PROTEIN S3
- Chain E
- 30S RIBOSOMAL PROTEIN S5
- Chain I
- 30S RIBOSOMAL PROTEIN S9
- Chain J
- 30S RIBOSOMAL PROTEIN S10
- Chain N
- 30S RIBOSOMAL PROTEIN S14
- Chain W
- 5'-R(*UP*UP*CP*AP*AP*AP)-3'
- Chain Z
- 5'-R(*GP*GP*GP*AP*UP*UP*GP*AP*AP*AP*AP*UP*CP*CP*C)-3'
Coloring options: