IL_4B3M_041

3D structure

PDB id

4B3M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 30S ribosome in complex with compound 1

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GGU*GCC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4B3M_041 not in the Motif Atlas

Geometric match to IL_1KFO_003

Geometric discrepancy: 0.2527

The information below is about IL_1KFO_003

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_44258.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

259

Unit IDs

4B3M|1|A|G|1010
4B3M|1|A|G|1011
4B3M|1|A|U|1012
*
4B3M|1|A|G|1017
4B3M|1|A|C|1018
4B3M|1|A|C|1019

Current chains

Chain A

16S RIBOSOMAL RNA

Nearby chains

Chain N

30S RIBOSOMAL PROTEIN S14 TYPE Z

Chain S

30S RIBOSOMAL PROTEIN S19