IL_4B3R_041

3D structure

PDB id

4B3R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 30S ribosome in complex with compound 30

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GCU*AGC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: GCU,AGC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4B3R_041 not in the Motif Atlas

Geometric match to IL_3SZX_003

Geometric discrepancy: 0.194

The information below is about IL_3SZX_003

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_01003.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

213

Unit IDs

4B3R|1|A|G|998
4B3R|1|A|C|999
4B3R|1|A|U|1000
*
4B3R|1|A|A|1041
4B3R|1|A|G|1042
4B3R|1|A|C|1043

Current chains

Chain A

16S RIBOSOMAL RNA

Nearby chains