IL_4B3T_018

3D structure

PDB id

4B3T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 30S ribosome in complex with compound 39

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GGACG*CGGUAC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4B3T_018 not in the Motif Atlas

Geometric match to IL_4LFB_018

Geometric discrepancy: 0.1027

The information below is about IL_4LFB_018

Detailed Annotation

6x5 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_88269.4

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

4B3T|1|A|G|446
4B3T|1|A|G|447
4B3T|1|A|A|448
4B3T|1|A|C|449
4B3T|1|A|G|450
*
4B3T|1|A|C|483
4B3T|1|A|G|484
4B3T|1|A|G|485
4B3T|1|A|U|486
4B3T|1|A|A|487
4B3T|1|A|C|488

Current chains

Chain A

16S RIBOSOMAL RNA

Nearby chains

Chain D

30S RIBOSOMAL PROTEIN S4

Chain P

30S RIBOSOMAL PROTEIN S16