IL_4BPP_008

3D structure

PDB id

4BPP (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the eukaryotic 40S ribosomal subunit in complex with eIF1 and eIF1A - Complex 4

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

GUUA*UUUC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_41766.10

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

88

Unit IDs

4BPP|1|A|G|105
4BPP|1|A|U|106
4BPP|1|A|U|107
4BPP|1|A|A|108
*
4BPP|1|A|U|293
4BPP|1|A|U|294
4BPP|1|A|U|295
4BPP|1|A|C|296

Current chains

Chain A

18S RRNA

Nearby chains

Chain 2

40S RIBOSOMAL PROTEIN S8

Chain Q

40S RIBOSOMAL PROTEIN RPS11E

Chain W

40S RIBOSOMAL PROTEIN RPS4E