IL_4BPP_076

3D structure

PDB id

4BPP (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the eukaryotic 40S ribosomal subunit in complex with eIF1 and eIF1A - Complex 4

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

GUAUUUC*GUAAUC

Length

13 nucleotides

Bulged bases

4BPP|1|A|A|1461, 4BPP|1|A|U|1463, 4BPP|1|A|U|1464, 4BPP|1|A|A|1488, 4BPP|1|A|U|1489

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_06692.1

Basepair signature

cWW-tSS-L-cSS-R-L-cWW

Number of instances in this motif group

2

Unit IDs

4BPP|1|A|G|1459
4BPP|1|A|U|1460
4BPP|1|A|A|1461
4BPP|1|A|U|1462
4BPP|1|A|U|1463
4BPP|1|A|U|1464
4BPP|1|A|C|1465
*
4BPP|1|A|G|1485
4BPP|1|A|U|1486
4BPP|1|A|A|1487
4BPP|1|A|A|1488
4BPP|1|A|U|1489
4BPP|1|A|C|1490

Current chains

Chain A

18S RRNA

Nearby chains

Chain C

40S RIBOSOMAL PROTEIN RPS3E

Chain J

40S RIBOSOMAL PROTEIN RPS20E

Chain N

40S RIBOSOMAL PROTEIN RPS29E

Chain T

40S RIBOSOMAL PROTEIN RPS19E