IL_4BTS_002

3D structure

PDB id

4BTS (explore in PDB, NAKB, or RNA 3D Hub)

Description

THE CRYSTAL STRUCTURE OF THE EUKARYOTIC 40S RIBOSOMAL SUBUNIT IN COMPLEX WITH EIF1 AND EIF1A

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

ACA*UAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4BTS_002 not in the Motif Atlas

Geometric match to IL_4V88_417

Geometric discrepancy: 0.124

The information below is about IL_4V88_417

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

4BTS|1|AA|A|23
4BTS|1|AA|C|24
4BTS|1|AA|A|25
*
4BTS|1|AA|U|594
4BTS|1|AA|A|595
4BTS|1|AA|U|596

Current chains

Chain AA

18S ribosomal RNA

Nearby chains

Chain AD

40S RIBOSOMAL PROTEIN RPS9E

Chain AL

40S RIBOSOMAL PROTEIN S12