IL_4BTS_025

3D structure

PDB id

4BTS (explore in PDB, NAKB, or RNA 3D Hub)

Description

THE CRYSTAL STRUCTURE OF THE EUKARYOTIC 40S RIBOSOMAL SUBUNIT IN COMPLEX WITH EIF1 AND EIF1A

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

AAG*CAUU

Length

7 nucleotides

Bulged bases

4BTS|1|AA|A|499

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4BTS_025 not in the Motif Atlas

Geometric match to IL_1XJR_003

Geometric discrepancy: 0.2847

The information below is about IL_1XJR_003

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

4BTS|1|AA|A|472
4BTS|1|AA|A|473
4BTS|1|AA|G|474
*
4BTS|1|AA|C|498
4BTS|1|AA|A|499
4BTS|1|AA|U|500
4BTS|1|AA|U|501

Current chains

Chain AA

18S ribosomal RNA

Nearby chains

Chain AD

40S RIBOSOMAL PROTEIN RPS9E

Chain AX

40S RIBOSOMAL PROTEIN RPS30E

Chain BD

40S RIBOSOMAL PROTEIN RPS9E