IL_4BTS_066

3D structure

PDB id

4BTS (explore in PDB, NAKB, or RNA 3D Hub)

Description

THE CRYSTAL STRUCTURE OF THE EUKARYOTIC 40S RIBOSOMAL SUBUNIT IN COMPLEX WITH EIF1 AND EIF1A

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

CUG*CG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4BTS_066 not in the Motif Atlas

Geometric match to IL_4V88_454

Geometric discrepancy: 0.1867

The information below is about IL_4V88_454

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_18604.1

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

46

Unit IDs

4BTS|1|AA|C|1278
4BTS|1|AA|U|1279
4BTS|1|AA|G|1280
*
4BTS|1|AA|C|1289
4BTS|1|AA|G|1290

Current chains

Chain AA

18S ribosomal RNA

Nearby chains

Chain A5

40S RIBOSOMAL PROTEIN RPS26E

Chain AB

40S RIBOSOMAL PROTEIN SA

Chain AV

40S RIBOSOMAL PROTEIN RPS17E