IL_4BTS_101

3D structure

PDB id

4BTS (explore in PDB, NAKB, or RNA 3D Hub)

Description

THE CRYSTAL STRUCTURE OF THE EUKARYOTIC 40S RIBOSOMAL SUBUNIT IN COMPLEX WITH EIF1 AND EIF1A

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

GUA*UGAUC

Length

8 nucleotides

Bulged bases

4BTS|1|BA|A|258

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4BTS_101 not in the Motif Atlas

Geometric match to IL_7RQB_022

Geometric discrepancy: 0.223

The information below is about IL_7RQB_022

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

Major groove platform

Motif group

IL_05564.2

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

14

Unit IDs

4BTS|1|BA|G|199
4BTS|1|BA|U|200
4BTS|1|BA|A|201
*
4BTS|1|BA|U|256
4BTS|1|BA|G|257
4BTS|1|BA|A|258
4BTS|1|BA|U|259
4BTS|1|BA|C|260

Current chains

Chain BA

18S ribosomal RNA

Nearby chains

Chain B2

40S RIBOSOMAL PROTEIN S8

Chain BW

40S RIBOSOMAL PROTEIN RPS4E