IL_4BTS_129

3D structure

PDB id

4BTS (explore in PDB, NAKB, or RNA 3D Hub)

Description

THE CRYSTAL STRUCTURE OF THE EUKARYOTIC 40S RIBOSOMAL SUBUNIT IN COMPLEX WITH EIF1 AND EIF1A

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

GGAC*GUUUU

Length

9 nucleotides

Bulged bases

4BTS|1|BA|U|937

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4BTS_129 not in the Motif Atlas

Homologous match to IL_4V88_429

Geometric discrepancy: 0.1329

The information below is about IL_4V88_429

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_30621.4

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

66

Unit IDs

4BTS|1|BA|G|845
4BTS|1|BA|G|846
4BTS|1|BA|A|847
4BTS|1|BA|C|848
*
4BTS|1|BA|G|935
4BTS|1|BA|U|936
4BTS|1|BA|U|937
4BTS|1|BA|U|938
4BTS|1|BA|U|939

Current chains

Chain BA

18S ribosomal RNA

Nearby chains

Chain B3

40S RIBOSOMAL PROTEIN RPS7E

Chain B6

40S RIBOSOMAL PROTEIN S27

Chain BO

40S RIBOSOMAL PROTEIN RPS13E