IL_4BTS_250

3D structure

PDB id

4BTS (explore in PDB, NAKB, or RNA 3D Hub)

Description

THE CRYSTAL STRUCTURE OF THE EUKARYOTIC 40S RIBOSOMAL SUBUNIT IN COMPLEX WITH EIF1 AND EIF1A

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

GGGAUA*UUGAAC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4BTS_250 not in the Motif Atlas

Geometric match to IL_4V88_462

Geometric discrepancy: 0.1239

The information below is about IL_4V88_462

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

4BTS|1|CA|G|1512
4BTS|1|CA|G|1513
4BTS|1|CA|G|1514
4BTS|1|CA|A|1515
4BTS|1|CA|U|1516
4BTS|1|CA|A|1517
*
4BTS|1|CA|U|1538
4BTS|1|CA|U|1539
4BTS|1|CA|G|1540
4BTS|1|CA|A|1541
4BTS|1|CA|A|1542
4BTS|1|CA|C|1543

Current chains

Chain CA

18S ribosomal RNA

Nearby chains

Chain CG

40S RIBOSOMAL PROTEIN RPS5E

Chain CM

40S RIBOSOMAL PROTEIN RPS18E

Chain CT

40S RIBOSOMAL PROTEIN RPS19E