IL_4BTS_329

3D structure

PDB id

4BTS (explore in PDB, NAKB, or RNA 3D Hub)

Description

THE CRYSTAL STRUCTURE OF THE EUKARYOTIC 40S RIBOSOMAL SUBUNIT IN COMPLEX WITH EIF1 AND EIF1A

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

CUGC*GAG

Length

7 nucleotides

Bulged bases

4BTS|1|DA|U|1312

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4BTS_329 not in the Motif Atlas

Homologous match to IL_4V88_455

Geometric discrepancy: 0.1603

The information below is about IL_4V88_455

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

4BTS|1|DA|C|1311
4BTS|1|DA|U|1312
4BTS|1|DA|G|1313
4BTS|1|DA|C|1314
*
4BTS|1|DA|G|1353
4BTS|1|DA|A|1354
4BTS|1|DA|G|1355

Current chains

Chain DA

18S ribosomal RNA

Nearby chains

Chain DI

40S RIBOSOMAL PROTEIN RPS16E

Chain DJ

40S RIBOSOMAL PROTEIN RPS20E

Chain DR

40S RIBOSOMAL PROTEIN RACK1

Chain DV

40S RIBOSOMAL PROTEIN RPS17E