IL_4C40_001

3D structure

PDB id

4C40 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The molecular recognition of kink turn structure by the L7Ae class of proteins

Experimental method

X-RAY DIFFRACTION

Resolution

2.2 Å

Loop

Sequence

CGAAGAAC*GGGAG

Length

13 nucleotides

Bulged bases

4C40|1|A|A|6

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4C40_001 not in the Motif Atlas

Geometric match to IL_4CS1_002

Geometric discrepancy: 0.0294

The information below is about IL_4CS1_002

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.6

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

26

Unit IDs

4C40|1|A|C|3
4C40|1|A|G|4
4C40|1|A|A|5
4C40|1|A|A|6
4C40|1|A|G|7
4C40|1|A|A|8
4C40|1|A|A|9
4C40|1|A|C|10
*
4C40|1|A|G|13||||9_557
4C40|1|A|G|14||||9_557
4C40|1|A|G|15||||9_557
4C40|1|A|A|16||||9_557
4C40|1|A|G|17||||9_557

Current chains

Chain A

5'-(*GP*GP*CP*GP*AP*AP*GP*AP*AP*CP*CP*GP*GP*GP *GP*AP*GP*CP*C)-3'

Nearby chains