IL_4D5N_002

3D structure

PDB id

4D5N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

GAU*AUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4D5N_002 not in the Motif Atlas

Geometric match to IL_9DFE_029

Geometric discrepancy: 0.3419

The information below is about IL_9DFE_029

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_42997.5

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

23

Unit IDs

4D5N|1|X|G|6130
4D5N|1|X|A|6131
4D5N|1|X|U|6132
*
4D5N|1|X|A|6154
4D5N|1|X|U|6155
4D5N|1|X|C|6156

Current chains

Chain X

CRICKET PARALYSIS VIRUS IRES RNA

Nearby chains