IL_4D5N_005

3D structure

PDB id

4D5N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

AAAAUGUGAUCUUGC*GUAGUGCUAUUUU

Length

28 nucleotides

Bulged bases

4D5N|1|X|A|6032, 4D5N|1|X|G|6044

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4D5N|1|X|A|6031
4D5N|1|X|A|6032
4D5N|1|X|A|6033
4D5N|1|X|A|6034
4D5N|1|X|U|6035
4D5N|1|X|G|6036
4D5N|1|X|U|6037
4D5N|1|X|G|6038
4D5N|1|X|A|6039
4D5N|1|X|U|6040
4D5N|1|X|C|6041
4D5N|1|X|U|6042
4D5N|1|X|U|6043
4D5N|1|X|G|6044
4D5N|1|X|C|6045
*
4D5N|1|X|G|6082
4D5N|1|X|U|6083
4D5N|1|X|A|6084
4D5N|1|X|G|6085
4D5N|1|X|U|6086
4D5N|1|X|G|6087
4D5N|1|X|C|6088
4D5N|1|X|U|6089
4D5N|1|X|A|6090
4D5N|1|X|U|6091
4D5N|1|X|U|6092
4D5N|1|X|U|6093
4D5N|1|X|U|6094

Current chains

Chain X

CRICKET PARALYSIS VIRUS IRES RNA

Nearby chains