IL_4D5N_008

3D structure

PDB id

4D5N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

UGCCUAG*CAAUA

Length

12 nucleotides

Bulged bases

4D5N|1|X|A|6137

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4D5N|1|X|U|6132
4D5N|1|X|G|6133
4D5N|1|X|C|6134
4D5N|1|X|C|6135
4D5N|1|X|U|6136
4D5N|1|X|A|6137
4D5N|1|X|G|6138
*
4D5N|1|X|C|6150
4D5N|1|X|A|6151
4D5N|1|X|A|6152
4D5N|1|X|U|6153
4D5N|1|X|A|6154

Current chains

Chain X

CRICKET PARALYSIS VIRUS IRES RNA

Nearby chains