IL_4D61_009

3D structure

PDB id

4D61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

UUCCUUU*AUUCGA

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4D61|1|1|U|115
4D61|1|1|U|116
4D61|1|1|C|117
4D61|1|1|C|118
4D61|1|1|U|119
4D61|1|1|U|120
4D61|1|1|U|121
*
4D61|1|1|A|343
4D61|1|1|U|344
4D61|1|1|U|345
4D61|1|1|C|346
4D61|1|1|G|347
4D61|1|1|A|348

Current chains

Chain 1

18S RRNA

Nearby chains

Chain E

40S RIBOSOMAL PROTEIN S4, Y ISOFORM 1

Chain I

40S RIBOSOMAL PROTEIN S8

Chain L

40S RIBOSOMAL PROTEIN S11