IL_4D61_010

3D structure

PDB id

4D61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

GAUAAC*GCUAAUAC

Length

14 nucleotides

Bulged bases

4D61|1|1|U|172

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4D61|1|1|G|146
4D61|1|1|A|147
4D61|1|1|U|148
4D61|1|1|A|149
4D61|1|1|A|150
4D61|1|1|C|151
*
4D61|1|1|G|167
4D61|1|1|C|168
4D61|1|1|U|169
4D61|1|1|A|170
4D61|1|1|A|171
4D61|1|1|U|172
4D61|1|1|A|173
4D61|1|1|C|174

Current chains

Chain 1

18S RRNA

Nearby chains

Chain G

40S RIBOSOMAL PROTEIN S6

Chain Y

40S RIBOSOMAL PROTEIN S24