IL_4D61_023

3D structure

PDB id

4D61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

GACUC*GAGGCC

Length

11 nucleotides

Bulged bases

4D61|1|1|G|547

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4D61|1|1|G|535
4D61|1|1|A|536
4D61|1|1|C|537
4D61|1|1|U|538
4D61|1|1|C|539
*
4D61|1|1|G|544
4D61|1|1|A|545
4D61|1|1|G|546
4D61|1|1|G|547
4D61|1|1|C|548
4D61|1|1|C|549

Current chains

Chain 1

18S RRNA

Nearby chains

Chain J

40S RIBOSOMAL PROTEIN S9

Chain e

40S RIBOSOMAL PROTEIN S30