IL_4D61_041
3D structure
- PDB id
- 4D61 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9 Å
Loop
- Sequence
- CCGCUAG*CUUGGACCGG
- Length
- 17 nucleotides
- Bulged bases
- 4D61|1|1|G|970
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4D61_041 not in the Motif Atlas
- Homologous match to IL_8C3A_440
- Geometric discrepancy: 0.3923
- The information below is about IL_8C3A_440
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_22252.1
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-L-R-L-cWW-L
- Number of instances in this motif group
- 1
Unit IDs
4D61|1|1|C|950
4D61|1|1|C|951
4D61|1|1|G|952
4D61|1|1|C|953
4D61|1|1|U|954
4D61|1|1|A|955
4D61|1|1|G|956
*
4D61|1|1|C|967
4D61|1|1|U|968
4D61|1|1|U|969
4D61|1|1|G|970
4D61|1|1|G|971
4D61|1|1|A|972
4D61|1|1|C|973
4D61|1|1|C|974
4D61|1|1|G|975
4D61|1|1|G|976
Current chains
- Chain 1
- 18S RRNA
Nearby chains
- Chain B
- 40S RIBOSOMAL PROTEIN S3A
- Chain O
- 40S RIBOSOMAL PROTEIN S14
Coloring options: