IL_4D61_062
3D structure
- PDB id
- 4D61 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9 Å
Loop
- Sequence
- CAU*AGG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4D61_062 not in the Motif Atlas
- Geometric match to IL_5UNE_001
- Geometric discrepancy: 0.2158
- The information below is about IL_5UNE_001
- Detailed Annotation
- Isolated non-canonical cWW contact
- Broad Annotation
- No text annotation
- Motif group
- IL_44465.1
- Basepair signature
- cWW-L-R-cWW
- Number of instances in this motif group
- 9
Unit IDs
4D61|1|1|C|1395
4D61|1|1|A|1396
4D61|1|1|U|1397
*
4D61|1|1|A|1448
4D61|1|1|G|1449
4D61|1|1|G|1450
Current chains
- Chain 1
- 18S RRNA
Nearby chains
- Chain Q
- 40S RIBOSOMAL PROTEIN S16
- Chain R
- 40S RIBOSOMAL PROTEIN S17
- Chain U
- 40S RIBOSOMAL PROTEIN S20
- Chain g
- GUANINE NUCLEOTIDE-BINDING PROTEIN SUBUNIT BETA-2-LIKE 1
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