IL_4D61_088
3D structure
- PDB id
- 4D61 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9 Å
Loop
- Sequence
- UCCUUU*AUUCG
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4D61_088 not in the Motif Atlas
- Homologous match to IL_8P9A_382
- Geometric discrepancy: 0.3957
- The information below is about IL_8P9A_382
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_29223.1
- Basepair signature
- cWW-L-R-L-cWW-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
4D61|1|1|U|116
4D61|1|1|C|117
4D61|1|1|C|118
4D61|1|1|U|119
4D61|1|1|U|120
4D61|1|1|U|121
*
4D61|1|1|A|343
4D61|1|1|U|344
4D61|1|1|U|345
4D61|1|1|C|346
4D61|1|1|G|347
Current chains
- Chain 1
- 18S RRNA
Nearby chains
- Chain E
- 40S RIBOSOMAL PROTEIN S4, Y ISOFORM 1
- Chain I
- 40S RIBOSOMAL PROTEIN S8
Coloring options: