IL_4D61_096
3D structure
- PDB id
- 4D61 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9 Å
Loop
- Sequence
- CGGACAGGAUUG*CUCGAUUCCG
- Length
- 22 nucleotides
- Bulged bases
- 4D61|1|1|A|1284, 4D61|1|1|G|1285, 4D61|1|1|G|1286, 4D61|1|1|A|1287, 4D61|1|1|A|1313
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4D61|1|1|C|1279
4D61|1|1|G|1280
4D61|1|1|G|1281
4D61|1|1|A|1282
4D61|1|1|C|1283
4D61|1|1|A|1284
4D61|1|1|G|1285
4D61|1|1|G|1286
4D61|1|1|A|1287
4D61|1|1|U|1288
4D61|1|1|U|1289
4D61|1|1|G|1290
*
4D61|1|1|C|1309
4D61|1|1|U|1310
4D61|1|1|C|1311
4D61|1|1|G|1312
4D61|1|1|A|1313
4D61|1|1|U|1314
4D61|1|1|U|1315
4D61|1|1|C|1316
4D61|1|1|C|1317
4D61|1|1|G|1318
Current chains
- Chain 1
- 18S RRNA
Nearby chains
- Chain K
- 40S RIBOSOMAL PROTEIN S10
- Chain M
- 40S RIBOSOMAL PROTEIN S12
- Chain d
- 40S RIBOSOMAL PROTEIN S29
- Chain f
- UBIQUITIN-40S RIBOSOMAL PROTEIN S27A
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