IL_4D61_106

3D structure

PDB id

4D61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

AAAAUGUGAUCUUGC*GUAGUGCUAUUUU

Length

28 nucleotides

Bulged bases

4D61|1|j|A|6032, 4D61|1|j|G|6044

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4D61|1|j|A|6031
4D61|1|j|A|6032
4D61|1|j|A|6033
4D61|1|j|A|6034
4D61|1|j|U|6035
4D61|1|j|G|6036
4D61|1|j|U|6037
4D61|1|j|G|6038
4D61|1|j|A|6039
4D61|1|j|U|6040
4D61|1|j|C|6041
4D61|1|j|U|6042
4D61|1|j|U|6043
4D61|1|j|G|6044
4D61|1|j|C|6045
*
4D61|1|j|G|6082
4D61|1|j|U|6083
4D61|1|j|A|6084
4D61|1|j|G|6085
4D61|1|j|U|6086
4D61|1|j|G|6087
4D61|1|j|C|6088
4D61|1|j|U|6089
4D61|1|j|A|6090
4D61|1|j|U|6091
4D61|1|j|U|6092
4D61|1|j|U|6093
4D61|1|j|U|6094

Current chains

Chain j

CRICKET PARALYSIS VIRUS IRES RNA

Nearby chains