IL_4D61_107

3D structure

PDB id

4D61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

UGCCUAGU*ACAAUA

Length

14 nucleotides

Bulged bases

4D61|1|j|A|6137

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4D61|1|j|U|6132
4D61|1|j|G|6133
4D61|1|j|C|6134
4D61|1|j|C|6135
4D61|1|j|U|6136
4D61|1|j|A|6137
4D61|1|j|G|6138
4D61|1|j|U|6139
*
4D61|1|j|A|6149
4D61|1|j|C|6150
4D61|1|j|A|6151
4D61|1|j|A|6152
4D61|1|j|U|6153
4D61|1|j|A|6154

Current chains

Chain j

CRICKET PARALYSIS VIRUS IRES RNA

Nearby chains