IL_4DR1_061

3D structure

PDB id

4DR1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the apo 30S ribosomal subunit from Thermus thermophilus (HB8)

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

GGAGC*GUGAC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4DR1_061 not in the Motif Atlas

Geometric match to IL_5J7L_274

Geometric discrepancy: 0.344

The information below is about IL_5J7L_274

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

4DR1|1|A|G|1416
4DR1|1|A|G|1417
4DR1|1|A|A|1418
4DR1|1|A|G|1419
4DR1|1|A|C|1420
*
4DR1|1|A|G|1480
4DR1|1|A|U|1481
4DR1|1|A|G|1482
4DR1|1|A|A|1483
4DR1|1|A|C|1484

Current chains

Chain A

16S rRNA

Nearby chains

Chain L

30S ribosomal protein S12