IL_4DR3_041

3D structure

PDB id

4DR3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with streptomycin bound

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

CUA*UAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: CUA,UAG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4DR3_041 not in the Motif Atlas

Geometric match to IL_5MWI_002

Geometric discrepancy: 0.1272

The information below is about IL_5MWI_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

4DR3|1|A|C|999
4DR3|1|A|U|1000
4DR3|1|A|A|1001
*
4DR3|1|A|U|1040
4DR3|1|A|A|1041
4DR3|1|A|G|1042

Current chains

Chain A

16S rRNA

Nearby chains