IL_4DR3_068

3D structure

PDB id

4DR3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with streptomycin bound

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

CCAC*GGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4DR3_068 not in the Motif Atlas

Homologous match to IL_4LFB_067

Geometric discrepancy: 0.1263

The information below is about IL_4LFB_067

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.15

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

4DR3|1|A|C|1259
4DR3|1|A|C|1260
4DR3|1|A|A|1261
4DR3|1|A|C|1262
*
4DR3|1|A|G|1273
4DR3|1|A|G|1274
4DR3|1|A|A|1275
4DR3|1|A|G|1276

Current chains

Chain A

16S rRNA

Nearby chains

Chain U

30S ribosomal protein THX