IL_4DR3_069

3D structure

PDB id

4DR3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with streptomycin bound

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

G(4OC)C(5MC)*G(UR3)AAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 4OC, 5MC, UR3

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4DR3_069 not in the Motif Atlas

Geometric match to IL_8CRE_467

Geometric discrepancy: 0.3079

The information below is about IL_8CRE_467

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_25873.2

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

4DR3|1|A|G|1401
4DR3|1|A|4OC|1402
4DR3|1|A|C|1403
4DR3|1|A|5MC|1404
*
4DR3|1|A|G|1497
4DR3|1|A|UR3|1498
4DR3|1|A|A|1499
4DR3|1|A|A|1500
4DR3|1|A|C|1501

Current chains

Chain A

16S rRNA

Nearby chains