IL_4DR4_035

3D structure

PDB id

4DR4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with codon, cognate transfer RNA anticodon stem-loop and multiple copies of paromomycin molecules bound

Experimental method

X-RAY DIFFRACTION

Resolution

3.97 Å

Loop

Sequence

GA*UAC

Length

5 nucleotides

Bulged bases

4DR4|1|A|A|1394

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4DR4_035 not in the Motif Atlas

Homologous match to IL_4LFB_035

Geometric discrepancy: 0.1069

The information below is about IL_4LFB_035

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

130

Unit IDs

4DR4|1|A|G|922
4DR4|1|A|A|923
*
4DR4|1|A|U|1393
4DR4|1|A|A|1394
4DR4|1|A|C|1395

Current chains

Chain A

16S rRNA

Nearby chains

Chain E

30S ribosomal protein S5