IL_4DR4_039

3D structure

PDB id

4DR4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with codon, cognate transfer RNA anticodon stem-loop and multiple copies of paromomycin molecules bound

Experimental method

X-RAY DIFFRACTION

Resolution

3.97 Å

Loop

Sequence

GACAUGCU*AGCAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4DR4|1|A|G|993
4DR4|1|A|A|994
4DR4|1|A|C|995
4DR4|1|A|A|996
4DR4|1|A|U|997
4DR4|1|A|G|998
4DR4|1|A|C|999
4DR4|1|A|U|1000
*
4DR4|1|A|A|1041
4DR4|1|A|G|1042
4DR4|1|A|C|1043
4DR4|1|A|A|1044
4DR4|1|A|C|1045

Current chains

Chain A

16S rRNA

Nearby chains

Chain N

30S ribosomal protein S14