IL_4DR4_070

3D structure

PDB id

4DR4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with codon, cognate transfer RNA anticodon stem-loop and multiple copies of paromomycin molecules bound

Experimental method

X-RAY DIFFRACTION

Resolution

3.97 Å

Loop

Sequence

CUGC*GAGGAAG

Length

11 nucleotides

Bulged bases

4DR4|1|A|U|1159

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4DR4_070 not in the Motif Atlas

Geometric match to IL_5J7L_053

Geometric discrepancy: 0.1516

The information below is about IL_5J7L_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_42032.1

Basepair signature

cWW-cSH-cWW-tWH-L-cWW-L-L

Number of instances in this motif group

2

Unit IDs

4DR4|1|A|C|1158
4DR4|1|A|U|1159
4DR4|1|A|G|1160
4DR4|1|A|C|1161
*
4DR4|1|A|G|1175
4DR4|1|A|A|1176
4DR4|1|A|G|1177
4DR4|1|A|G|1178
4DR4|1|A|A|1179
4DR4|1|A|A|1180
4DR4|1|A|G|1181

Current chains

Chain A

16S rRNA

Nearby chains

Chain B

30S ribosomal protein S2

Chain I

30S ribosomal protein S9