IL_4DR5_015

3D structure

PDB id

4DR5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with codon, crystallographically disordered cognate transfer RNA anticodon stem-loop and streptomycin bound

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

UUC*GA

Length

5 nucleotides

Bulged bases

4DR5|1|A|U|368

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4DR5_015 not in the Motif Atlas

Homologous match to IL_4LFB_014

Geometric discrepancy: 0.1202

The information below is about IL_4LFB_014

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

4DR5|1|A|U|367
4DR5|1|A|U|368
4DR5|1|A|C|369
*
4DR5|1|A|G|392
4DR5|1|A|A|393

Current chains

Chain A

16S rRNA

Nearby chains

Chain P

30S ribosomal protein S16