IL_4DR5_064

3D structure

PDB id

4DR5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with codon, crystallographically disordered cognate transfer RNA anticodon stem-loop and streptomycin bound

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

UGG*CUGA

Length

7 nucleotides

Bulged bases

4DR5|1|A|G|388

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4DR5_064 not in the Motif Atlas

Homologous match to IL_6CZR_128

Geometric discrepancy: 0.205

The information below is about IL_6CZR_128

Detailed Annotation

Single bulged G, near cWW

Broad Annotation

Single bulged G, near cWW

Motif group

IL_52767.5

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

28

Unit IDs

4DR5|1|A|U|375
4DR5|1|A|G|376
4DR5|1|A|G|377
*
4DR5|1|A|C|386
4DR5|1|A|U|387
4DR5|1|A|G|388
4DR5|1|A|A|389

Current chains

Chain A

16S rRNA

Nearby chains

Chain P

30S ribosomal protein S16