IL_4DR5_070

3D structure

PDB id

4DR5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with codon, crystallographically disordered cognate transfer RNA anticodon stem-loop and streptomycin bound

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

GU(5MC)*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4DR5_070 not in the Motif Atlas

Homologous match to IL_5J7L_363

Geometric discrepancy: 0.2117

The information below is about IL_5J7L_363

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

4DR5|1|A|G|1405
4DR5|1|A|U|1406
4DR5|1|A|5MC|1407
*
4DR5|1|A|G|1494
4DR5|1|A|U|1495
4DR5|1|A|C|1496

Current chains

Chain A

16S rRNA

Nearby chains

Chain L

30S ribosomal protein S12

Chain V

5'-R(*UP*UP*U)-3'

Chain W

5'-R(*GP*GP*GP*AP*UP*UP*GP*AP*AP*AP*AP*UP*CP*CP*C)-3'