IL_4DR6_064

3D structure

PDB id

4DR6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with codon, near-cognate transfer RNA anticodon stem-loop mismatched at the first codon position and streptomycin bound

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

AGGG*CCU

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4DR6_064 not in the Motif Atlas

Geometric match to IL_4N0T_004

Geometric discrepancy: 0.2592

The information below is about IL_4N0T_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_99358.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

8

Unit IDs

4DR6|1|A|A|1001
4DR6|1|A|G|1002
4DR6|1|A|G|1003
4DR6|1|A|G|1003|||A
*
4DR6|1|A|C|1038
4DR6|1|A|C|1039
4DR6|1|A|U|1040

Current chains

Chain A

16S rRNA

Nearby chains