IL_4DR7_054

3D structure

PDB id

4DR7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with codon, crystallographically disordered near-cognate transfer RNA anticodon stem-loop mismatched at the second codon position, and streptomycin bound

Experimental method

X-RAY DIFFRACTION

Resolution

3.75 Å

Loop

Sequence

CGGAUUG*CAUGAAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4DR7|1|A|C|1303
4DR7|1|A|G|1304
4DR7|1|A|G|1305
4DR7|1|A|A|1306
4DR7|1|A|U|1307
4DR7|1|A|U|1308
4DR7|1|A|G|1309
*
4DR7|1|A|C|1328
4DR7|1|A|A|1329
4DR7|1|A|U|1330
4DR7|1|A|G|1331
4DR7|1|A|A|1332
4DR7|1|A|A|1333
4DR7|1|A|G|1334

Current chains

Chain A

16S rRNA

Nearby chains

Chain M

30S ribosomal protein S13

Chain S

30S ribosomal protein S19

Chain U

30S ribosomal protein THX