3D structure

PDB id
4DR7 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with codon, crystallographically disordered near-cognate transfer RNA anticodon stem-loop mismatched at the second codon position, and streptomycin bound
Experimental method
X-RAY DIFFRACTION
Resolution
3.75 Å

Loop

Sequence
GU(5MC)AC*GAAGUC
Length
11 nucleotides
Bulged bases
4DR7|1|A|A|1492||A, 4DR7|1|A|A|1493||A
QA status
Modified nucleotides: 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4DR7_056 not in the Motif Atlas
Homologous match to IL_4LFB_058
Geometric discrepancy: 0.2333
The information below is about IL_4LFB_058
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

4DR7|1|A|G|1405
4DR7|1|A|U|1406
4DR7|1|A|5MC|1407
4DR7|1|A|A|1408
4DR7|1|A|C|1409
*
4DR7|1|A|G|1491
4DR7|1|A|A|1492||A
4DR7|1|A|A|1493||A
4DR7|1|A|G|1494
4DR7|1|A|U|1495
4DR7|1|A|C|1496

Current chains

Chain A
16S rRNA

Nearby chains

Chain L
30S ribosomal protein S12
Chain V
5'-R(*UP*UP*UP*U)-3'
Chain W
5'-R(*GP*CP*CP*UP*GP*GP*AP*AP*AP*GP*(PSU))-3'

Coloring options:


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